Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR7500318/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  136,828,693
 Normal Paired: 134,481,620 (98.28%)
 Chimeric Paired: 5,467 (0.00%)
 Chimeric Ambiguous: 1,932 (0.00%)
 Unmapped: 2,339,674 (1.71%)
 Ligation Motif Present: 12,012 (0.01%)
Alignable (Normal+Chimeric Paired): 134,487,087 (98.29%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-23T05:17:06,585]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 44,391,420 (32.44%)
PCR Duplicates: 90,095,667 (65.85%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 47,101,727
Intra-fragment Reads: 25,479,700 (18.62% / 57.40%)
Below MAPQ Threshold: 5,249,187 (3.84% / 11.82%)
Hi-C Contacts: 13,662,533 (9.99% / 30.78%)
 Ligation Motif Present: 4,656  (0.00% / 0.01%)
 3' Bias (Long Range): 84% - 16%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,892,181  (1.38% / 4.26%)
Intra-chromosomal: 11,770,352  (8.60% / 26.51%)
Short Range (<20Kb): 7,305,305  (5.34% / 16.46%)
Long Range (>20Kb): 4,465,010  (3.26% / 10.06%)